2024
The status of MRI databases across the world focused on psychiatric and neurological disorders
Saori C Tanaka
Kiyoto Kasai
Yasumasa Okamoto
Shinsuke Koike
Takuya Hayashi
Ayumu Yamashita
Okito Yamashita
Tom Johnstone
Franco Pestilli
Kenji Doya
Go Okada
Hotaka Shinzato
Eri Itai
Yuji Takahara
Akihiro Takamiya
Motoaki Nakamura
Takashi Itahashi
Ryuta Aoki
Yukiaki Koizumi
Masaaki Shimizu
Jun Miyata
Shuraku Son
Morio Aki
Naohiro Okada
Susumu Morita
Nobukatsu Sawamoto
Mitsunari Abe
Yuki Oi
Kazuaki Sajima
Koji Kamagata
Masakazu Hirose
Yohei Aoshima
Sayo Hamatani
Nobuhiro Nohara
Misako Funaba
Tomomi Noda
Kana Inoue
Jinichi Hirano
Masaru Mimura
Hidehiko Takahashi
Nobutaka Hattori
Atsushi Sekiguchi
Mitsuo Kawato
Takashi Hanakawa
Psychiatry and Clinical Neurosciences
Aug 2024
doi.org/10.1111/pcn.13717
Associative white matter tracts selectively predict sensorimotor learning
S Vinci-Booher
DJ McDonald
E Berquist
F Pestilli
Nature Publishing Group
Jun 2024
doi.org/10.1038/s42003-024-06420-1
brainlife. io a decentralized and open-source cloud platform to support neuroscience research
Soichi Hayashi
Bradley A Caron
Anibal Sólon Heinsfeld
Sophia Vinci-Booher
Brent McPherson
Daniel N Bullock
Giulia Bertò
Guiomar Niso
Sandra Hanekamp
Daniel Levitas
Kimberly Ray
Anne MacKenzie
Paolo Avesani
Lindsey Kitchell
Josiah K Leong
Filipi Nascimento-Silva
Serge Koudoro
Hanna Willis
Jasleen K Jolly
Derek Pisner
Taylor R Zuidema
Jan W Kurzawski
Kyriaki Mikellidou
Aurore Bussalb
Maximilien Chaumon
Nathalie George
Christopher Rorden
Conner Victory
Dheeraj Bhatia
Dogu Baran Aydogan
Fang-Cheng F Yeh
Franco Delogu
Javier Guaje
Jelle Veraart
Jeremy Fischer
Joshua Faskowitz
Ricardo Fabrega
David Hunt
Shawn McKee
Shawn T Brown
Stephanie Heyman
Vittorio Iacovella
Amanda F Mejia
Daniele Marinazzo
R Cameron Craddock
Emanuale Olivetti
Jamie L Hanson
Eleftherios Garyfallidis
Dan Stanzione
James Carson
Robert Henschel
David Y Hancock
Craig A Stewart
David Schnyer
Damian O Eke
Russell A Poldrack
Steffen Bollmann
Ashley Stewart
Holly Bridge
Ilaria Sani
Winrich A Freiwald
Aina Puce
Nicholas L Port
Franco Pestilli
Nature Methods
May 2024
doi.org/10.1038/s41592-024-02237-2
Neurodesk an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Angela I Renton
Thuy T Dao
Tom Johnstone
Oren Civier
Ryan P Sullivan
David J White
Paris Lyons
Benjamin M Slade
David F Abbott
Toluwani J Amos
Saskia Bollmann
Andy Botting
Megan EJ Campbell
Jeryn Chang
Thomas G Close
Monika Dörig
Korbinian Eckstein
Gary F Egan
Stefanie Evas
Guillaume Flandin
Kelly G Garner
Marta I Garrido
Satrajit S Ghosh
Martin Grignard
Yaroslav O Halchenko
Anthony J Hannan
Anibal S Heinsfeld
Laurentius Huber
Matthew E Hughes
Jakub R Kaczmarzyk
Lars Kasper
Levin Kuhlmann
Kexin Lou
Yorguin-Jose Mantilla-Ramos
Jason B Mattingley
Michael L Meier
Jo Morris
Akshaiy Narayanan
Franco Pestilli
Aina Puce
Fernanda L Ribeiro
Nigel C Rogasch
Chris Rorden
Mark M Schira
Thomas B Shaw
Paul F Sowman
Gershon Spitz
Ashley W Stewart
Xincheng Ye
Judy D Zhu
Aswin Narayanan
Steffen Bollmann
Nature methods
May 2024
doi.org/10.1038/s41592-023-02145-x
ezBIDS Guided standardization of neuroimaging data interoperable with major data archives and platforms
Daniel Levitas
Soichi Hayashi
Sophia Vinci-Booher
Anibal Heinsfeld
Dheeraj Bhatia
Nicholas Lee
Anthony Galassi
Guiomar Niso
Franco Pestilli
Scientific data
Feb 2024
doi.org/10.1038/s41597-024-02959-0
Diffusion tensor analysis of white matter tracts is prognostic of persisting post-concussion symptoms in collegiate athletes
Giulia Bertò
Lauren T Rooks
Steven P Broglio
Thomas A McAllister
Michael A McCrea
Paul F Pasquina
Christopher Giza
Alison Brooks
Jason Mihalik
Kevin Guskiewicz
Josh Goldman
Stefan Duma
Steven Rowson
Nicholas L Port
Franco Pestilli
Neuroimage clinical
Jan 2024
doi.org/10.1016/j.nicl.2024.103646
2023
A Maturity Model for Operations in Neuroscience Research
Erik C Johnson
Thinh T Nguyen
Benjamin K Dichter
Frank Zappulla
Montgomery Kosma
Kabilar Gunalan
Yaroslav O Halchenko
Shay Q Neufeld
Michael Schirner
Petra Ritter
Maryann E Martone
Brock Wester
Franco Pestilli
Dimitri Yatsenko
arXiv preprint arXiv 2401.00077
Dec 2023
doi.org/10.48550/arXiv.2401.00077
A labeled Clinical-MRI dataset of Nigerian brains
Eberechi Wogu
Patrick Filima
Bradley Caron
Daniel Levitas
Peer Herholz
Catherine Leal
Mohammed F Mehboob
Soichi Hayashi
Simisola Akintoye
George Ogoh
Tawe Godwin
Damian Eke
Franco Pestilli
Arxiv
Nov 2023
PMID 37986723
Development of human hippocampal subfield microstructure and relation to associative inference
Sophia Vinci-Booher
Margaret L Schlichting
Alison R Preston
Franco Pestilli
Cerebral Cortex
Sep 2023
doi.org/10.1093/cercor/bhad276
The Growth Rate of COVID-19 Cases in Spring 2020 Was Associated With Individual Mobility and County-level Political Leaning
Chris Parker
Jorge Mejia
Franco Pestilli
SSRN 4714781
Jul 2023
doi.org/10.2139/ssrn.4714781
2022
White matter tracts traveling between cortical regions associated with the dorsal and ventral visual streams predict learning a perceptual-motor task
Sophia Vinci-Booher
Elizabeth Berquist
Franco Pestilli
Journal of Vision
Dec 2022
doi:https://doi.org/10.1167/jov.22.14.4258
Open and reproducible neuroimaging From study inception to publication
Guiomar Niso
Rotem Botvinik-Nezer
Stefan Appelhoff
Alejandro De La Vega
Oscar Esteban
Joset A Etzel
Karolina Finc
Melanie Ganz
Remi Gau
Yaroslav O Halchenko
Peer Herholz
Agah Karakuzu
David B Keator
Christopher J Markiewicz
Camille Maumet
Cyril R Pernet
Franco Pestilli
Nazek Queder
Tina Schmitt
Weronika Sójka
Adina S Wagner
Kirstie J Whitaker
Jochem W Rieger
NeuroImage
Nov 2022
doi.org/10.1016/j.neuroimage.2022.119623
A taxonomy of the brain’s white matter twenty-one major tracts for the 21st century
Daniel N Bullock
Elena A Hayday
Mark D Grier
Wei Tang
Franco Pestilli
Sarah R Heilbronner
Cerebral Cortex
Oct 2022
doi.org/10.1093/cercor/bhab500
Denoising diffusion weighted imaging data using convolutional neural networks
Hu Cheng
Sophia Vinci-Booher
Jian Wang
Bradley Caron
Qiuting Wen
Sharlene Newman
Franco Pestilli
Plos one
Sep 2022
doi.org/10.1371/journal.pone.0274396
sparsegl An r package for estimating sparse group lasso
Xiaoxuan Liang
Aaron Cohen
Anibal Solón Heinsfeld
Franco Pestilli
Daniel J McDonald
arXiv preprint arXiv:2208.02942
Aug 2022
doi.org/10.48550/arXiv.2208.02942
GPU-accelerated connectome discovery at scale
Varsha Sreenivasan
Sawan Kumar
Franco Pestilli
Partha Talukdar
Devarajan Sridharan
Nature Computational Science
May 2022
doi.org/10.1038/s43588-022-00250-z
Development of white matter tracts between and within the dorsal and ventral streams
S Vinci-Booher
B Caron
D Bullock
K James
Franco Pestilli
Brain Structure and Function
May 2022
doi.org/10.1007/s00429-021-02414-5
Visual information routes in the posterior dorsal and ventral face network studied with intracranial neurophysiology and white matter tract endpoints
Mariana Babo-Rebelo
Aina Puce
D Bullock
Laurent Hugueville
Franco Pestilli
C Adam
Katia Lehongre
Virginie Lambrecq
Vera Dinkelacker
Nathalie George
Cerebral Cortex
Jan 2022
doi.org/10.1093/cercor/bhab212
Mapping the Microstructure and Striae of the Human Olfactory Tract with Diffusion MRI
Shiloh L. Echevarria-Cooper
Guangyu Zhou
Christina Zelano
Franco Pestilli
Todd B. Parrish
Thorsten Kahnt
The Journal of Neuroscience
Jan 2022
10.1523/JNEUROSCI.1552-21.2021
A massive 7T fMRI dataset to bridge cognitive neuroscience and artificial intelligence
Emily J Allen
Ghislain St-Yves
Yihan Wu
Jesse L Breedlove
Jacob S Prince
Logan T Dowdle
Matthias Nau
Brad Caron
Franco Pestilli
Ian Charest
J Benjamin Hutchinson
Thomas Naselaris
Kendrick Kay
Nat Neurosci
Jan 2022
doi.org/10.1038/s41593-021-00962-x
2021
Deep learning and cross-species analysis identify the influences of sex and cannabinoid signaling on cerebellar vermis morphology
Kylie Black
Brent McPherson
John Hainline
Shawyon Baygani
Brynna Webb
Tristen Mier
Amanda Essex
Ken Mackie
Franco Pestilli
Anna Kalinovsky
Jul 2021
10.1101/2021.07.03.450642
International Data Governance for Neuroscience
Damian Eke
Amy Bernard
Jan G. Bjaalie
Ricardo Chavarriaga
Takashi Hanakawa
Anthony Hannan
Sean Hill
Maryann Elizabeth Martone
Agnes McMahon
Oliver Ruebel
Edda Thiels
Franco Pestilli
Jun 2021
10.31234/osf.io/esz9b
Development of white matter tracts between and within the dorsal and ventral streams
S. Vinci-Booher
B. Caron
D. Bullock
K. James
F. Pestilli
Jan 2021
10.1101/2021.01.27.428423
In defense of decentralized research data management
Michael Hanke
Franco Pestilli
Adina S. Wagner
Christopher J. Markiewicz
Jean-Baptiste Poline
Yaroslav O. Halchenko
Neuroforum
Jan 2021
10.1515/nf-2020-0037
2020
A single-mode associates global patterns of brain network structure and behavior across the human lifespan
Brent McPherson
Franco Pestilli
Sep 2020
10.1101/2020.09.24.312090
The visual white matter connecting human area prostriata and the thalamus is retinotopically organized
Jan W. Kurzawski
Kyriaki Mikellidou
Maria Concetta Morrone
Franco Pestilli
Brain Structure and Function
Jul 2020
10.1007/s00429-020-02096-5
Visual information routes in the posterior dorsal and ventral face network studied with intracranial neurophysiology, and white matter tract endpoints
M Babo-Rebelo
A Puce
D Bullock
L Hugueville
F Pestilli
C Adam
K Lehongre
V Lambrecq
V Dinkelacker
N George
May 2020
10.1101/2020.05.22.102046
The visual white matter connecting human area prostriata and the thalamus is retinotopically organized
Jan W. Kurzawski
Kyriaki Mikellidou
Maria Concetta Morrone
Franco Pestilli
Apr 2020
10.1101/2020.04.19.047993
Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation
Giulia Bertò
Daniel Bullock
Pietro Astolfi
Soichi Hayashi
Luca Zigiotto
Luciano Annicchiarico
Francesco Corsini
Alessandro De Benedictis
Silvio Sarubbo
Franco Pestilli
Paolo Avesani
Emanuele Olivetti
Feb 2020
10.1101/2020.02.10.942714
Advanced mapping of the human white matter microstructure better separates elite sports participation
Bradley Caron
Daniel Bullock
Lindsey Kitchell
Brent McPherson
Derek Alexander Kellar
Hu Cheng
Sharlene D. Newman
Nicholas L. Port
Franco Pestilli
Jan 2020
10.31234/osf.io/dxaqp
2019
Associative white matter connecting the dorsal and ventral posterior human cortex
Daniel Bullock
Hiromasa Takemura
Cesar F. Caiafa
Lindsey Kitchell
Brent McPherson
Bradley Caron
Franco Pestilli
Brain Structure and Function
Nov 2019
10.1007/s00429-019-01907-8
Triple visual hemifield maps in optic chiasm hypoplasia
Khazar Ahmadi
Alessio Fracasso
Robert J. Puzniak
Andre D. Gouws
Renat Yakupov
Oliver Speck
Joern Kaufmann
Franco Pestilli
Serge O. Dumoulin
Antony B. Morland
Michael B. Hoffmann
Jul 2019
10.1101/703520
Associative white matter connecting the dorsal and ventral posterior human cortex
Daniel N. Bullock
Hiromasa Takemura
Cesar Caiafa
Lindsey Kitchell
Brent McPherson
Bradley Caron
Franco Pestilli
Jul 2019
10.31234/osf.io/kp3hj
Quantifying nerve decussation abnormalities in the optic chiasm
Robert J. Puzniak
Khazar Ahmadi
Jörn Kaufmann
Andre Gouws
Antony B. Morland
Franco Pestilli
Michael B. Hoffmann
May 2019
10.1101/633347
Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network
Ilaria Sani
Brent C McPherson
Heiko Stemmann
Franco Pestilli
Winrich A Freiwald
eLife
Jan 2019
10.7554/eLife.40520
2018
Age-related macular degeneration affects the optic radiation white matter projecting to locations of retinal damage
Shoyo Yoshimine
Shumpei Ogawa
Hiroshi Horiguchi
Masahiko Terao
Atsushi Miyazaki
Kenji Matsumoto
Hiroshi Tsuneoka
Tadashi Nakano
Yoichiro Masuda
Franco Pestilli
Brain Structure and Function
Nov 2018
10.1007/s00429-018-1702-5
Age-related macular degeneration affects the optic radiation white matter projecting to locations of retinal damage
Shoyo Yoshimine
Shumpei Ogawa
Hiroshi Horiguchi
Masahiko Terao
Atsushi Miyazaki
Kenji Matsumoto
Hiroshi Tsuneoka
Tadashi Nakano
Yoichiro Masuda
Franco Pestilli
May 2018
10.1101/336206
2016
Ensemble Tractography
Hiromasa Takemura
Saad Jbabdi
Cesar F. Caiafa
Brian A. Wandell
Franco Pestilli
PLOS Computational Biology
Feb 2016
10.1371/journal.pcbi.1004692
2015
Test-retest measurements and digital validation for in vivo neuroscience
Franco Pestilli
Scientific Data
Dec 2015
10.1038/sdata.2014.57
Saccade Planning Evokes Topographically Specific Activity in the Dorsal and Ventral Streams
G. T. Saber
F. Pestilli
C. E. Curtis
Journal of Neuroscience
Jan 2015
10.1523/jneurosci.1687-14.2015
2014
Evaluation and statistical inference for human connectomes
Franco Pestilli
Jason D Yeatman
Ariel Rokem
Kendrick N Kay
Brian A Wandell
Nat Meth
Sep 2014
10.1038/nmeth.3098
A review of the mechanisms by which attentional feedback shapes visual selectivity
Sam Ling
Janneke F. M. Jehee
Franco Pestilli
Brain Struct Funct
Jul 2014
10.1007/s00429-014-0818-5
2007
How do attention and adaptation affect contrast sensitivity?
F. Pestilli
G. Viera
M. Carrasco
Journal of Vision
May 2007
10.1167/7.7.9